rs245339683 SNP Detail

Summary

• ID
  rs245339683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184467599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCTTTCAA TATTTGTGCA ACTTTATCTC
  CACCGGCAAG TTGCTGTGGT GACGCAAATC CGCTCTTCTG TATTACAACT TCCAAAATAA
  ATGCACGGAA ATCAATTCCC TTCTAGCAAT GAAAATATAA ATACACAGCT GCGACTTTCG
  Y
  CTTTAATCTT TGCTTTCCGA GCGTCCCCGG GCTGTGGTGA AATGAACTAG CCCAGAGTTG
  TTGTTGCGTT GTGCACCTAG TCAGGGAGGC CCTGGGGGCA GAGGCGTGGA CTCCCAAGGG
  ACCTTGTAAC CACCAGGGAA AGAAAAGGGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320168850	CHEV_1_186559281	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245339683					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184467599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1159	CpG island 1159	656 bp distal
Gm34342	predicted gene, 34342	within coordinates
Rr425267	regulatory region 425267	1235 bp distal
Rr425268	regulatory region 425268	within coordinates
Tssr10590	transcription start site region 10590	4 bp upstream
Tssr15648	transcription start site region 15648	375 bp upstream