rs245357201 SNP Detail

Summary

• ID
  rs245357201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:79921229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATGTCGT AGGGACCAGC
  GTAGGCTGAA AGCAGCAGGA GGTTTAGACT TCCTTAAACT ATTTTTTGTT TGTTTGTTTG
  TTTTTTGTTT TTTCCAAGAC AGGGTTTCTC TGTGAAGCCC TGGCTGTCCT GGAACTCACT
  CTGTAGACCA GGCTGGCCTC GATCCGCCTG CCTCTGCCTC CCAAGTGCTG GGATTAAAGG
  Y
  GTGCGCCGCC ACGCCCGGCT ACTTCCTTAA ACTCTTTATC CTTTCATGCA TAAACTTTTT
  TTTTTTTTAA TTATATGTAA GTACACTGTA GCTGTCCTCA GACACTCCAG AAGAGGGAGT
  CAGATCTCAT TACGGATGGT TGTGAGCCAC CATGTGGTTG CTGGGATTTG AACTTCGGAC
  CTTCGGAAGA GCAGTCGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss399161973	MGP_WTSI_17_80013140	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs245357201					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399161973	MGP_WTSI_17_80013140	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79921229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9519	CpG island 9519	1015 bp proximal
Gm56916	predicted gene, 56916	1708 bp upstream
Rmdn2	regulator of microtubule dynamics 2	within coordinates
Rr392984	regulatory region 392984	885 bp upstream
Rr531314	regulatory region 531314	740 bp proximal
Rr531315	regulatory region 531315	1719 bp proximal
Tssr145918	transcription start site region 145918	1942 bp downstream
Tssr145919	transcription start site region 145919	1233 bp upstream
Tssr145920	transcription start site region 145920	1258 bp upstream
Tssr145921	transcription start site region 145921	1392 bp upstream
Tssr145922	transcription start site region 145922	1408 bp upstream
Tssr145923	transcription start site region 145923	1436 bp upstream
Tssr145924	transcription start site region 145924	1455 bp upstream
Tssr145925	transcription start site region 145925	1716 bp upstream
Tssr149447	transcription start site region 149447	1646 bp downstream