rs245358186 SNP Detail

Summary

• ID
  rs245358186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGATACCAA CGTGGTCCAC
  ACCGTCAACA CTGCCCTGGC TGCCTTCAAC ACACAGAATA ATGGAACCTA TTTTAAACTG
  GTGGAGATTT CCCGGGCTCA AAATGTGGTA AAAACTTAAC ACTCTTTTGA TAGATTTGGG
  CGATTTGGTG GCCCTTGGGG CATGTGTGGG GGTGATAACC AGAAGAAAAG GAAACATTGG
  Y
  TGGAAGAACT GGCAGGGGTT CTAGAACTTA TGGAGCCCTA AACTCTCAGC AGCGCTGTCC
  CAAACTGAGC CAGTTCAACA TAGGTCAGCC ACAGGCAGAA GGCAGGTAAC ACCCTGGCCT
  CCTGGCTTTA CCTAACACTT AATAGCAGGG CTCTCTGTTC AGACACAATA CATTCACCGG
  GTGCCACACG TTTACACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325113556	CHEV_16_22895524	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245358186					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714201 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1065 bp upstream
Rr513336	regulatory region 513336	1121 bp distal
Rr513337	regulatory region 513337	655 bp distal
Tssr4819	transcription start site region 4819	110 bp downstream
Tssr4820	transcription start site region 4820	496 bp upstream
Tssr137563	transcription start site region 137563	1210 bp downstream
Tssr137564	transcription start site region 137564	1180 bp downstream
Tssr137565	transcription start site region 137565	1043 bp downstream
Tssr137566	transcription start site region 137566	1034 bp downstream
Tssr137567	transcription start site region 137567	666 bp downstream
Tssr137568	transcription start site region 137568	635 bp downstream
Tssr137569	transcription start site region 137569	614 bp downstream
Tssr137570	transcription start site region 137570	597 bp downstream
Tssr137571	transcription start site region 137571	259 bp downstream
Tssr137572	transcription start site region 137572	160 bp downstream
Tssr137573	transcription start site region 137573	150 bp downstream
Tssr137574	transcription start site region 137574	131 bp downstream
Tssr137575	transcription start site region 137575	121 bp downstream
Tssr137576	transcription start site region 137576	549 bp upstream
Tssr137577	transcription start site region 137577	971 bp upstream
Tssr137578	transcription start site region 137578	1042 bp upstream
Tssr140504	transcription start site region 140504	1059 bp upstream
Tssr140505	transcription start site region 140505	1010 bp upstream
Tssr140506	transcription start site region 140506	590 bp upstream
Tssr140507	transcription start site region 140507	227 bp upstream
Tssr140508	transcription start site region 140508	185 bp upstream
Tssr140509	transcription start site region 140509	167 bp upstream
Tssr140510	transcription start site region 140510	119 bp upstream
Tssr140511	transcription start site region 140511	105 bp upstream
Tssr140512	transcription start site region 140512	1106 bp downstream
Tssr140513	transcription start site region 140513	1117 bp downstream
Tssr140514	transcription start site region 140514	1150 bp downstream