rs245368466 SNP Detail

Summary

• ID
  rs245368466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57806591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTGTTT TTTGTTTGTT
  TGATGGTTTG TTTGTTTTTG AGACAGGCTT TCTCTATATA ACAGCCTTGA TTGTCCTGGG
  ACTCACTTTG TAGAGAATCA GGTTGGCTTC AAACTCACAG AGATCTATCT ACCTCTGTAT
  GTCCTCCCAA GTGTTAGAGG GTAAAAAAAA AAGAAAGAAA ATATGTAAAA TTGGACTTGG
  Y
  AGATGAACTG TGTGCTTTCT TAAAAATGAC AGAGGACTGA GTGTCCCTAG AACGGCAAGG
  TGTGCTAGGA GGAGCCCATT GTCCAATAAG CTTATCCCAA ATGGGGAAAC TGAGGCCCAG
  AACACGGAAA CGAGTTGCCA GGCTGTGCAA GCAGGCTAAG GCAAAGGCTG GCTTCTTCAG
  TGCTCAGCAT CTTAACTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ	ZALENDE/EiJ
ss383508344	MGP_WTSI_11_57729267	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ	ZALENDE/EiJ
rs245368466					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383508344	MGP_WTSI_11_57729267	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57806591 () rs orientation: forward

Symbol	Name	Function Class
D11Mit143	DNA segment, Chr 11, Massachusetts Institute of Technology 143	937 bp distal
Gm33078	predicted gene, 33078	within coordinates
Gm73794	predicted gene, 73794	within coordinates
Rr250602	regulatory region 250602	992 bp distal
Rr250603	regulatory region 250603	within coordinates