rs245371353 SNP Detail

Summary

• ID
  rs245371353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84569587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACAACAA AATGACAGAT
  TAATCTAAGA AAACAGATTA AACAGTCTCT AAAGAGGCAC ATGCGTCTCT CACTCTCAAC
  ATCAGAACCA CTGAAGCAAA CAATGCCAAG GCAATGGATA TTTCCCCAAG GCATCTCATC
  CGAGAGAAGG GGGAGGCGCC ATCTAGAGGG GCCACTCACA ATTCCCGTGG TTCTAAGAAC
  Y
  TGTCTTACCA CCCTATAGGA CGAGACTGAA GACCAGACAA TGGCTTAGAT GTGGGCTGCA
  TGGATGTGTG GATCCTTGGC TCTGTATTTT ATCTCACTTC AGGGCCCCAA AGACAGACTT
  GGGGTTCACT GGAACTCTAC AATGTGGCTA TATCGAATCA ATCAATCAAT CAATCAATAT
  CTCTCCCTTT CTCTTCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261868	CHEV_16_84772944	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245371353					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84569587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	1227 bp proximal
Jam2	junction adhesion molecule 2	1424 bp upstream
Tssr139177	transcription start site region 139177	304 bp upstream
Tssr139178	transcription start site region 139178	953 bp upstream
Tssr139179	transcription start site region 139179	1156 bp upstream
Tssr139180	transcription start site region 139180	1191 bp upstream
Tssr139181	transcription start site region 139181	1387 bp upstream
Tssr139182	transcription start site region 139182	1437 bp upstream
Tssr139183	transcription start site region 139183	1464 bp upstream
Tssr139184	transcription start site region 139184	1476 bp upstream
Tssr139185	transcription start site region 139185	1530 bp upstream
Tssr139186	transcription start site region 139186	1564 bp upstream
Tssr139187	transcription start site region 139187	1602 bp upstream
Tssr139188	transcription start site region 139188	1622 bp upstream
Tssr139189	transcription start site region 139189	1662 bp upstream
Tssr139190	transcription start site region 139190	1729 bp upstream
Tssr141866	transcription start site region 141866	85 bp upstream