rs245379499 SNP Detail

Summary

• ID
  rs245379499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135144142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGGCCTTT CATAACAAGC CTTTTGTGAG AAATAACCAG
  AGTTCCTTGA GAATTGCTTC AGTTCCTGTC AAAGGCAATA CCATTCAGTG ACCTAATGGC
  Y
  TCCTACTGGT CTGCACCTTT TAAAGGTTCC GTCACTTCCC ATGTTACCAC CCTGGGGACC
  AAGTTTCCAA CATACAAATG TCGATGTGTT ACAAGACCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325979740	CHEV_X_132777932	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245379499					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135144142 () rs orientation: forward

Symbol	Name	Function Class
Gm39535	predicted gene, 39535	within coordinates
Rr693756	regulatory region 693756	1266 bp proximal
Rr693757	regulatory region 693757	1622 bp proximal
Rr693758	regulatory region 693758	1800 bp proximal
Tceal9	transcription elongation factor A like 9	1687 bp upstream
Tssr162036	transcription start site region 162036	1672 bp upstream
Tssr162037	transcription start site region 162037	1724 bp upstream