rs245391836 SNP Detail

Summary

• ID
  rs245391836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27995489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTAAAAT TGGCATTCCC
  TTAGTGGGTA GAGGGTCACT ACCTTCTCTA ATTCTCTCAA ATCCTGTGAG GGTGGTGGTT
  CACCTCACAG ATTCAGAGAC TGAGTTGCTG GAAGGTGGTT ACTGCACTCC TGAGATCAAT
  CCGCACGTGA CTCCTGCTCT TCCCTAGTCA AGGGGGGAAT CACCACCATC ATGCCGGGAC
  Y
  AATGACCAAG TACATCTATC TGTTCACTAG GCGGCAGGTA CCCAGACTCT GTTACTGCTA
  TGGTTAAGGT AGTTTAGTAA TAGTTTTTAT ACTTTGACAT TCCAGGACGA GTGCCCACAG
  AGACAGGGAA ACACATTTGT AGCTTCAGGG GCTGCAGGGA TGAAGACCGC AGTGCTGAAC
  AAGCAGGGTC TATGGTTTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349531	CHEV_17_27913460	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245391836					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27995489 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr340954	regulatory region 340954	112 bp proximal
Tssr147065	transcription start site region 147065	1422 bp downstream