rs245399496 SNP Detail

Summary

• ID
  rs245399496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122828470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTATGTGC TTTTAGGAGT
  CTTATGTGAT GGTACACCCT CTCAAAGCCA GAGGCCCCCC TCACAGAACC TCGTTAGCAC
  TCCTTCCTCA GAATAGACAC ATTTTCTGAT AGACAGTTTC AGGTCTATGC TATTGATTTA
  AATAGGTATC TAAAAGGTAA CTTTATTTGG AAGTCCACAT CAGCTTAAAT TCCACCCCCC
  Y
  ACACTTTATT TTACACCTCC CTACTTCTGT TGTTTGAGGT TTTTTTTTTG CAGTACGCAC
  CCTGGGCAGC TCTCTGCTAC TGAGATTCGG GCTTACCCAG TGGCTTTCGG CACAGGCTCT
  CCATGTTGTC TAAGCTGGCT GACTTCCAAC TGACTATATT GTAGAAGAGG CTGACTGGAA
  GCTATGATTC TCCTGCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914810	MGP_WTSI_6_122801529	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245399496					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914810	MGP_WTSI_6_122801529	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122828470 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Rr142690	regulatory region 142690	1179 bp proximal
Tssr58711	transcription start site region 58711	1002 bp downstream
Tssr58712	transcription start site region 58712	921 bp downstream
Tssr58713	transcription start site region 58713	853 bp downstream
Tssr58714	transcription start site region 58714	1424 bp upstream
Tssr62984	transcription start site region 62984	1918 bp upstream
Tssr62985	transcription start site region 62985	1879 bp upstream
Tssr62986	transcription start site region 62986	1584 bp upstream
Tssr62987	transcription start site region 62987	1458 bp upstream
Tssr62988	transcription start site region 62988	1392 bp upstream
Tssr62989	transcription start site region 62989	1232 bp upstream
Tssr62990	transcription start site region 62990	1179 bp upstream
Tssr62991	transcription start site region 62991	1150 bp upstream
Tssr62992	transcription start site region 62992	1100 bp upstream
Tssr62993	transcription start site region 62993	1007 bp upstream
Tssr62994	transcription start site region 62994	830 bp upstream
Tssr62995	transcription start site region 62995	776 bp upstream
Tssr62996	transcription start site region 62996	639 bp upstream
Tssr62997	transcription start site region 62997	573 bp upstream
Tssr62998	transcription start site region 62998	502 bp upstream
Tssr62999	transcription start site region 62999	449 bp upstream
Tssr63000	transcription start site region 63000	426 bp upstream
Tssr63001	transcription start site region 63001	410 bp upstream
Tssr63002	transcription start site region 63002	1337 bp downstream