rs245400381 SNP Detail

Summary

• ID
  rs245400381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116425835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCAGCC CCATGTGGTG
  GTGTTGTGTT TTGTTTGTAG TAGAATGCCC TCGAGGACTG CTCCCACGGC CATGCAGAGT
  GCTGGTGCTG CTGAACCCCC AGGGTGGCAA GGGCAAGGCT CTGCAGCTCT TCCAGAGCCG
  TGTGCAGCCC TTCCTGGAGG AGGCAGAGAT AACCTTTAAA CTGATACTCA CCGGTGAGTG
  Y
  TGACCCCAGA GGGTGAAGGG AGCATTTCAT GCCAGAAAAC CAGCTCTGAG AACATCAACT
  CTTCCACCAG AACGGAAGAA CCATGCCAGG GAGCTGGTGT GTGCAGAGGA GTTGGGTCAC
  TGGGACGCCC TGGCAGTCAT GTCCGGTGAT GGTCTGATGC ATGAGGTAAG GGATGGGCTA
  GAGGATGGCC CAGAGGGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384854458	MGP_WTSI_11_116396323	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245400381					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384854458	MGP_WTSI_11_116396323	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116425835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	565 bp distal
Rr460329	regulatory region 460329	1943 bp distal
Rr460330	regulatory region 460330	1442 bp distal
Rr460331	regulatory region 460331	1742 bp distal
Rr460332	regulatory region 460332	259 bp distal
Rr460333	regulatory region 460333	314 bp distal
Rr460334	regulatory region 460334	1264 bp proximal
Sphk1	sphingosine kinase 1	within coordinates
Sphkos	sphingosine kinase 1, opposite strand lncRNA	1932 bp upstream
Tssr3739	transcription start site region 3739	1005 bp upstream
Tssr105968	transcription start site region 105968	1734 bp downstream
Tssr105969	transcription start site region 105969	1706 bp downstream
Tssr105970	transcription start site region 105970	1037 bp downstream
Tssr105971	transcription start site region 105971	955 bp downstream
Tssr105972	transcription start site region 105972	940 bp downstream
Tssr111937	transcription start site region 111937	1886 bp upstream
Tssr111938	transcription start site region 111938	1300 bp upstream