rs245404659 SNP Detail

Summary

• ID
  rs245404659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95240725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACCCATGC TCCAATGCCC CAGGCAGGTG
  TCTGGTTTTT CTCAGTGTTA CTTGATGGAA ATCTTAGATA AAGGCAACAT TATTCAAATG
  TAAGAGAACT AAATTTGGAG TTCAAGTTCT GTAAAGTAAA CTAGAGTAGG CAGATCACAG
  Y
  CCCAGGTATT TGCTaaggta atatacaaac tttctctctt ccataagttc agggatagtt
  ttgcagcttg aggcagccca tagcaaaaac tagttaacag gggcacaatt ttcttgttgg
  ttttatttca aaaggatgac tgtaggtctc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319848310	CHEV_1_97209577	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245404659					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95240725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	428 bp proximal
Fam174a	family with sequence similarity 174, member A	628 bp upstream
Rr29863	regulatory region 29863	75 bp proximal
Rr396183	regulatory region 396183	361 bp upstream
Tssr8214	transcription start site region 8214	607 bp upstream
Tssr8215	transcription start site region 8215	678 bp upstream
Tssr8216	transcription start site region 8216	1087 bp upstream
Tssr8217	transcription start site region 8217	1106 bp upstream
Tssr8218	transcription start site region 8218	1124 bp upstream
Tssr8219	transcription start site region 8219	1150 bp upstream
Tssr13058	transcription start site region 13058	1055 bp downstream