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rs245408090 SNP Detail
Summary
  • ID
    rs245408090
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:44385212 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTCCTAGGC AGCACTAGGC
AGGCTGGGTG GCCACAAAGC AAAGAAGGCA TGGAAGGTTC AAAACCATGG GAAGCCAAGT
TTCTACACAA TCCAAGGAGG AAACTAAAGC AATGGATGGA GCCAACACCA TGCGGATCCC
TGGCAGATGT TCCCCAAGGG CTTCATCTGG AAATGCACCT CTTAGCAGCT ACTTACAGAC
R
CTGCCCCTCA ACCTCACTAG TTCCTGCCCA GCCACGAAAG AAACTGGCAA CCCAGGCAAC
ACCTCGGGTC CTTCGATTAT TTTCTAAGTG AAATAGTTTC ATGTTCCAAG TGAAGATTTT
GCTTATATTT TCATAGTTTC ACACCATATC TGTCCCCGAC AAATGTCAGC TGTTTAGTTA
TCAGTTCTAG GCACATTGAA                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552107 MGP_WTSI_19_44471263 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245408090 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552107 MGP_WTSI_19_44471263 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44385212 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 382 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 232 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 340 bp proximal
Rr548237 regulatory region 548237 1355 bp distal
Rr548238 regulatory region 548238 96 bp proximal
Rr548239 regulatory region 548239 1941 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 409 bp upstream
Tssr156606 transcription start site region 156606 347 bp downstream
Tssr156607 transcription start site region 156607 26 bp downstream
Tssr156608 transcription start site region 156608 368 bp upstream
Tssr156609 transcription start site region 156609 578 bp upstream
Tssr159448 transcription start site region 159448 1979 bp upstream
Tssr159449 transcription start site region 159449 1916 bp upstream
Tssr159450 transcription start site region 159450 1902 bp upstream
Tssr159451 transcription start site region 159451 1822 bp upstream
Tssr159452 transcription start site region 159452 1528 bp upstream
Tssr159453 transcription start site region 159453 1459 bp upstream
Tssr159454 transcription start site region 159454 1440 bp upstream
Tssr159455 transcription start site region 159455 1134 bp upstream
Tssr159456 transcription start site region 159456 1015 bp upstream
Tssr159457 transcription start site region 159457 986 bp upstream
Tssr159458 transcription start site region 159458 952 bp upstream
Tssr159459 transcription start site region 159459 860 bp upstream
Tssr159460 transcription start site region 159460 824 bp upstream
Tssr159461 transcription start site region 159461 763 bp upstream
Tssr159462 transcription start site region 159462 731 bp upstream
Tssr159463 transcription start site region 159463 692 bp upstream
Tssr159464 transcription start site region 159464 662 bp upstream
Tssr159465 transcription start site region 159465 642 bp upstream
Tssr159466 transcription start site region 159466 624 bp upstream
Tssr159467 transcription start site region 159467 560 bp upstream
Tssr159468 transcription start site region 159468 314 bp upstream
Tssr159469 transcription start site region 159469 249 bp upstream
Tssr159470 transcription start site region 159470 235 bp upstream
Tssr159471 transcription start site region 159471 202 bp upstream
Tssr159472 transcription start site region 159472 176 bp upstream
Tssr159473 transcription start site region 159473 157 bp upstream
Tssr159474 transcription start site region 159474 135 bp upstream
Tssr159475 transcription start site region 159475 88 bp upstream
Tssr159476 transcription start site region 159476 70 bp upstream
Tssr159477 transcription start site region 159477 61 bp upstream
Tssr159478 transcription start site region 159478 40 bp upstream
Tssr159479 transcription start site region 159479 22 bp upstream
Tssr159480 transcription start site region 159480 within coordinates
Tssr159481 transcription start site region 159481 46 bp downstream
Tssr159482 transcription start site region 159482 146 bp downstream
Tssr159483 transcription start site region 159483 237 bp downstream
Tssr159484 transcription start site region 159484 271 bp downstream
Tssr159485 transcription start site region 159485 397 bp downstream
Tssr159486 transcription start site region 159486 404 bp downstream
Tssr159487 transcription start site region 159487 485 bp downstream
Tssr159488 transcription start site region 159488 502 bp downstream
Tssr159489 transcription start site region 159489 556 bp downstream
Tssr159490 transcription start site region 159490 658 bp downstream
Tssr159491 transcription start site region 159491 693 bp downstream
Tssr159492 transcription start site region 159492 744 bp downstream
Tssr159493 transcription start site region 159493 770 bp downstream
Tssr159494 transcription start site region 159494 790 bp downstream
Tssr159495 transcription start site region 159495 908 bp downstream
Tssr159496 transcription start site region 159496 978 bp downstream
Tssr159497 transcription start site region 159497 991 bp downstream
Tssr159498 transcription start site region 159498 1003 bp downstream
Tssr159499 transcription start site region 159499 1033 bp downstream
Tssr159500 transcription start site region 159500 1064 bp downstream
Tssr159501 transcription start site region 159501 1079 bp downstream
Tssr159502 transcription start site region 159502 1115 bp downstream
Tssr159503 transcription start site region 159503 1128 bp downstream
Tssr159504 transcription start site region 159504 1207 bp downstream
Tssr159505 transcription start site region 159505 1320 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory