rs245410076 SNP Detail

Summary

• ID
  rs245410076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23862046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGACCC CTTTCCCTCT
  GGGTCGACTC CTCTATCCCT GCATGGGATA TGAGTCATCC CCAGAGCTCT GGCTTTCCTC
  AAATAAAGCC TCATGTGGTT TGCATCAAGC TTGGTCTCTC GTGAGTTCTT GGGGGTCCGC
  TATTATCCCA AGACTTGAGT GAGGGTTTCT CTTGTGAGGT CTTTCAAGCA CGCACATACG
  Y
  GCCAAGAGAA AGCAGGAGGA GCTGAGCAAC GTGCTGGCAG TCATGAGGAA GGCGGCAGCC
  AAGAAGGATT GATGAACCCT CCCCCAATAA AAGATGGTTC CTACAGTTAA AAAAAAAAAA
  AAACCACTGA AAACAAACCC TGCACCCTGC AATTCAGATG AAGTTGCTCT CTGCCTTTGA
  GCCCCCCTTG CCTGGGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397839626	MGP_WTSI_17_23780039	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245410076					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397839626	MGP_WTSI_17_23780039	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23862046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8679	CpG island 8679	1476 bp proximal
Gm7773	predicted gene 7773	within coordinates
Mmp25	matrix metallopeptidase 25	within coordinates
Rr339268	regulatory region 339268	1354 bp proximal
Tssr142937	transcription start site region 142937	859 bp downstream
Tssr146619	transcription start site region 146619	1306 bp upstream
Tssr146620	transcription start site region 146620	1881 bp downstream
Tssr146621	transcription start site region 146621	1907 bp downstream
Tssr146622	transcription start site region 146622	1927 bp downstream
Tssr146623	transcription start site region 146623	1975 bp downstream
Tssr146624	transcription start site region 146624	1994 bp downstream