rs245411081 SNP Detail

Summary

• ID
  rs245411081
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31996641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTATGCTTG CCGAAGACAG GATTTCCATT GCCATCCTGA
  AGATAGACGC TCAGCTGCTA CTGCCTGCTT CCCCAGCAAA CACCCCCTCC CCATACCCCC
  M
  ACCCCTATGC CCCAACTTCT CGGTCCCCTC TCCTTCCCAA GTTCCTCTAA GACTCTTCTA
  TCAGTCTTTC TCGTTGCTTT CTTGAGGAGT TCACAGATG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395853917	MGP_WTSI_16_32177909	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	C	A	A	C	C	C	A	A	A	A	C	A	A	C	C	C	C	A	C	C	C	A	C	C	A	A	A	A	C	C	A	C	A	A	A	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245411081					SNP	A	A	A	C	A	A	C	C	C	A	A	A	A	C	A	A	C	C	C	C	A	C	C	C	A	C	C	A	A	A	A	C	C	A	C	A	A	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395853917	MGP_WTSI_16_32177909	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31996641 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	1977 bp upstream
Rr370081	regulatory region 370081	509 bp downstream
Rr370082	regulatory region 370082	317 bp downstream
Rr514653	regulatory region 514653	75 bp distal
Tssr137949	transcription start site region 137949	234 bp downstream
Tssr137950	transcription start site region 137950	148 bp downstream
Tssr137951	transcription start site region 137951	1953 bp upstream
Tssr137952	transcription start site region 137952	1971 bp upstream
Tssr140794	transcription start site region 140794	869 bp upstream
Tssr140795	transcription start site region 140795	1756 bp downstream
Tssr140796	transcription start site region 140796	1773 bp downstream
Tssr140797	transcription start site region 140797	1791 bp downstream
Tssr140798	transcription start site region 140798	1852 bp downstream