rs245413842 SNP Detail

Summary

• ID
  rs245413842
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25153062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGGGTC CACTAAGCCA
  GAACCCGTTC ATGCGACTTG AGTCGGAGCG GCGGCGCGGG ACGCGGCCCG CTCAGCAGCT
  GCTGGAGCTG TACTGTCGCG TGCCCGGCGT GCGGACCATT CGAGCGGACA ACATCCTCAT
  CATCGAGTCA GCGCCAGGCT TCCCACCCGC TGTGCCGCCC GCTGCGGGCA TCCGCGCTGC
  M
  GAGGTAGTAG TGTACGAGGC GCCACAGCCC GGCCGTGTCA GCCGCCTGCT GGAAAAGTTC
  GACTCGCCTG CTGCGCCCTG CCGCCGCGGG AGCCCAGAGC GCTTCCGCCC TGCGCTCCCG
  CAGCTTCCCG TGGCGTCTGC ATCTGCTGCC ACGCGCACTC CTACCAATCG GTCGTTGGCT
  CCTGCCTCAC CGGTGCGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353405722	MGP_WTSI_2_25118570	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245413842					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353405722	MGP_WTSI_2_25118570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25153062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11304	CpG island 11304	within coordinates
Rr396819	regulatory region 396819	460 bp downstream
Tprn	taperin	within coordinates
Tssr16679	transcription start site region 16679	507 bp downstream
Tssr16680	transcription start site region 16680	487 bp downstream
Tssr16681	transcription start site region 16681	380 bp downstream
Tssr16682	transcription start site region 16682	149 bp upstream
Tssr16683	transcription start site region 16683	162 bp upstream
Tssr16684	transcription start site region 16684	242 bp upstream
Tssr16685	transcription start site region 16685	309 bp upstream
Tssr16686	transcription start site region 16686	322 bp upstream
Tssr16687	transcription start site region 16687	869 bp upstream
Tssr16688	transcription start site region 16688	1220 bp upstream
Tssr16689	transcription start site region 16689	1254 bp upstream