rs245422825 SNP Detail

Summary

• ID
  rs245422825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121616353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCAAAGCC CGCTTGGGAT ATGTGATCCT TTCTTGGAAA
  TGGAGGGAGA AGGAGGGAGG AGGGAGGAGG TGGGGGAGAA CTGCAAAATG ATTCTTAGCT
  Y
  ACAGGCTCTA TAAACACAGG AGGTGAGGCG GATTTGGCTG GACAGCAGTA ATTTGCTATT
  TCATTAGGGA CATGAAAGAA CTGGCTAGGA ACCTGCTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320906100	CHEV_3_121525622	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245422825					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121616353 () rs orientation: forward

Symbol	Name	Function Class
D3Mit347	DNA Segment, Chr 3 Massachusetts Institute of Technology 347	361 bp proximal
Gm42776	predicted gene 42776	740 bp downstream
Rr584177	regulatory region 584177	1887 bp distal
Rr584178	regulatory region 584178	682 bp distal
Tssr31460	transcription start site region 31460	1224 bp upstream