rs245426974 SNP Detail

Summary

• ID
  rs245426974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:45008245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATAAAT TATTTTAATC
  ATGCTTATCA GACTTTAGAA ATAATAGTAG GTAAATTCAA GAAACAAACT GGGTTTTCTT
  CTCATGATTA TTAGAAAGTG GAAAAAAAAA CCCAACAAAA CAAAACAAAA CCAAAACCTC
  CCAAAGCTGT CTGTCTGCCC CCCCCCCCCC CCAACATCGA CTGATCAATT CAGGGAGAAG
  Y
  AGCCTGTTGT GCATTCTGTT TAATTGCTGA GCAGCAGATC CACACCTTGG GTTTGCTGCT
  TGCTTTCCTG GCCAGGTTGC TGTCCATTTC CTAGCAGGTG AGTGAACGTG AGAAGTCCGA
  TGCCACAGAT TGGCTACACT TACACTTTTC CTGATGATGA TAATTACTGC TCTTTCCTAC
  ACTTGTAACA CATTTGTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353808100	MGP_WTSI_2_44973753	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245426974					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353808100	MGP_WTSI_2_44973753	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45008245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11634	CpG island 11634	676 bp distal
Gm28643	predicted gene 28643	within coordinates
Rr373117	regulatory region 373117	583 bp downstream
Rr556444	regulatory region 556444	849 bp distal
Rr556445	regulatory region 556445	372 bp distal
Tssr17636	transcription start site region 17636	949 bp downstream
Tssr23988	transcription start site region 23988	1235 bp upstream
Tssr23989	transcription start site region 23989	888 bp upstream
Tssr23990	transcription start site region 23990	858 bp upstream
Tssr23991	transcription start site region 23991	822 bp upstream
Tssr23992	transcription start site region 23992	717 bp upstream
Tssr23993	transcription start site region 23993	694 bp upstream
Zeb2	zinc finger E-box binding homeobox 2	838 bp upstream