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rs245445917 SNP Detail
Summary
  • ID
    rs245445917
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:49025396 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTCAAACTT GTATTGATTT
CTCCGCTGCT GTTAGGTTTG CATTGCCCAA ATTTATTCCT TTATAGAATG TTTTAAATTG
TAAAATAGTT AATCCACATT TCTTACTAAA AGTTGGAACT AACCAGGGAG AAGCCTAGCA
TAGAAGGAAA AGTCCCCATG TTCTCTCTTC CCCAGTTCAT CCTGGCGTTG CTGGCCACGT
Y
TCTGCGCAGA TCATTCTCTA TGCACCTGGC GTTGCTGGCC ACGTTTCTGC GCAGATCATT
CTCTATGCAT TTACAAACAT CCTATGTGGT CTGTCATTTT GGATGTTATG TAAATGGGTT
CACATCATGT GCTGTGTTCT TTGCCCCTCT TTGCTAAATA ACCACAGAAA GCTTTCAGTT
ACTGTGCATG GAAATCTCTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368235237 MGP_WTSI_6_48998461 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245445917 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss368235237 MGP_WTSI_6_48998461 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:49025396 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm56981 predicted gene, 56981 within coordinates
Gpnmb glycoprotein (transmembrane) nmb within coordinates
Tssr56341 transcription start site region 56341 1741 bp downstream
Tssr56342 transcription start site region 56342 1709 bp downstream
Tssr56343 transcription start site region 56343 1163 bp downstream
Tssr56344 transcription start site region 56344 1139 bp downstream
Tssr56345 transcription start site region 56345 1120 bp downstream
Tssr56346 transcription start site region 56346 1067 bp downstream
Tssr56347 transcription start site region 56347 1049 bp downstream
Tssr56348 transcription start site region 56348 1026 bp downstream
Tssr56349 transcription start site region 56349 705 bp downstream
Tssr56350 transcription start site region 56350 676 bp downstream
Tssr56351 transcription start site region 56351 649 bp downstream
Tssr56352 transcription start site region 56352 630 bp downstream
Tssr56353 transcription start site region 56353 562 bp downstream
Tssr56354 transcription start site region 56354 548 bp downstream
Tssr56355 transcription start site region 56355 524 bp downstream
Tssr56356 transcription start site region 56356 506 bp downstream
Tssr56357 transcription start site region 56357 494 bp downstream
Tssr56358 transcription start site region 56358 476 bp downstream
Tssr56359 transcription start site region 56359 445 bp downstream
Tssr56360 transcription start site region 56360 398 bp downstream
Tssr56361 transcription start site region 56361 1420 bp upstream
Tssr56362 transcription start site region 56362 1648 bp upstream
Tssr56363 transcription start site region 56363 1935 bp upstream
Tssr60849 transcription start site region 60849 1100 bp upstream
Tssr60850 transcription start site region 60850 1047 bp upstream
Tssr60851 transcription start site region 60851 585 bp upstream
Tssr60852 transcription start site region 60852 556 bp upstream
Tssr60853 transcription start site region 60853 544 bp upstream
Tssr60854 transcription start site region 60854 527 bp upstream
Tssr60855 transcription start site region 60855 482 bp upstream
Tssr60856 transcription start site region 60856 455 bp upstream
Tssr60857 transcription start site region 60857 354 bp upstream
Tssr60858 transcription start site region 60858 1977 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory