rs245448525 SNP Detail

Summary

• ID
  rs245448525
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75234897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAAGAA ATGAAATCTC
  TTTTTAAAAA TTATTTTTAA AAAATGCACC TCATTGTTCA CTCCTGTTGT GATATTCACA
  TATAGAAGAA TCTGACAAAA GGAAAACACT AGGTTCATCC AAGAAGTCTA GAATGCTTTG
  GCCCTAGGAC CTGCCCTCAC ACAAGACAAT GAGCTAGGAA AAGGGTGTTG CTAGTGAAGT
  W
  AGCATGTACT TCGAAGCCCA AGAACAGGGC CAGAGGCAGA GAAAGGGTGA AGGACCCTAC
  AGCCAGGCGT TAGTCTAGCA TTTCACCTAC CCTTCTCTGT TACAGCAGCT CTCAGTGAGG
  GGATGGTGGC TTGCTCACGG GAATATGAAA GTGAAGCTCT GAGAAGCAAG TGAGCCATGC
  CTAGTCACTT CTATGATTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371935103	MGP_WTSI_7_82730035	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245448525					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371935103	MGP_WTSI_7_82730035	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75234897 () rs orientation: forward

Symbol	Name	Function Class
Akap13	A kinase anchor protein 13	within coordinates
Rr649259	regulatory region 649259	22 bp proximal
Rr649260	regulatory region 649260	1976 bp proximal
Tssr67241	transcription start site region 67241	549 bp upstream
Tssr67242	transcription start site region 67242	1030 bp upstream
Tssr67243	transcription start site region 67243	1054 bp upstream
Tssr67244	transcription start site region 67244	1075 bp upstream
Tssr67245	transcription start site region 67245	1112 bp upstream
Tssr67246	transcription start site region 67246	1130 bp upstream
Tssr67247	transcription start site region 67247	1158 bp upstream
Tssr67248	transcription start site region 67248	1214 bp upstream
Tssr67249	transcription start site region 67249	1237 bp upstream
Tssr67250	transcription start site region 67250	1270 bp upstream