rs245450583 SNP Detail

Summary

• ID
  rs245450583
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:88870507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTTGCTGT TTTCTGAGTC
  CCAAGCCTGG AAGATGGATT GTTCTTATCT GACTACTCAG ACCCCTTTTA CATCTTTGTT
  AGGTCTTAGG GTTGAGAAAG GGAGAGAGCC AAGTTCCATA GAGGGGATTT CAAAACAGGG
  TTGCTTGAGG GTCTGGGGAC TCTAGCACCC TGCTTCTTGC AGTGCTTTCT TGATTTGTAG
  M
  GGTTGTATTT TTTCATTCAC CTTCCAGATA GGATGTGGGT ATTGTTCTCA GGGTTGATTT
  AGGTCCACTG GGCTGTAGTT CTCCAGTCGT CTGCTAAGAC CAACTTCAGT GTTACATTTA
  GTGCTGGGTG TTATTTTACT CCCCGTGTAT TTCAGACCAG TTTGAGGTGA GGGTGGGGAT
  CAGAGCACAA AAGTAAGACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365797762	MGP_WTSI_5_89151673	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245450583					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365797762	MGP_WTSI_5_89151673	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88870507 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16032	CpG island 16032	579 bp distal
Gm57324	predicted gene, 57324	1815 bp upstream
Mob1b	MOB kinase activator 1B	Intron
Rr614169	regulatory region 614169	1884 bp distal
Rr614170	regulatory region 614170	1767 bp distal
Rr614171	regulatory region 614171	within coordinates
Rr614172	regulatory region 614172	1187 bp proximal
Rr614173	regulatory region 614173	1343 bp proximal
Tssr47022	transcription start site region 47022	1772 bp downstream
Tssr47023	transcription start site region 47023	1723 bp downstream
Tssr47024	transcription start site region 47024	1671 bp downstream
Tssr47025	transcription start site region 47025	1583 bp downstream
Tssr51697	transcription start site region 51697	1866 bp upstream