rs245460188 SNP Detail

Summary

• ID
  rs245460188
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79165978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTGAACT CAGAAGCCCT
  AAGGGCTCCT GACTGCTGAG CCCTCTCTCT AGCCCATATT TACAATACTT GGTGTACTGG
  CTGGTTTTGT CTGTCAACTT GACACAGGAT GGAGTTATCA CAGGGAAAGG AGCTTCAGTT
  GGCAAAATGC CTCCATGAGA TCCAGCTGTA AGACATTTTC TCAATTAGTG ATCAAGCGGG
  A
  AGGTCCCCTT GTGGGTGATG CCATCTCTGG GCTGGTAGTC TTGGTTCTAT AAGAGAGCAG
  GCTGAGCAAG CCAGTAAAGA ACATCCCTCC AGGGCTTCTG CATCAGCTCC TGCTTGAGTT
  CCAGGCCTGC ATCCTTTGGT GATCAACAGC AGTATAGAAA TGTAAGCCGA ATAAACCCTT
  TCCTCCCCAA CTGCTTCTTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759456	CHEV_11_79088654	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245460188					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79165978 () rs orientation: forward

Symbol	Name	Function Class
D11Mit94	DNA segment, Chr 11, Massachusetts Institute of Technology 94	278 bp distal
Gm44787	predicted gene 44787	1204 bp upstream
Rr241861	regulatory region 241861	within coordinates
Rr251784	regulatory region 251784	909 bp distal
Rr251785	regulatory region 251785	824 bp proximal
Tssr3596	transcription start site region 3596	1628 bp upstream
Tssr103435	transcription start site region 103435	1428 bp upstream
Tssr109475	transcription start site region 109475	1261 bp upstream