rs245461388 SNP Detail

Summary

• ID
  rs245461388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70989939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCAGTAT GCTAGGGTGC
  AAAGGACCGA CCCGGCAAAA TCGCAGGGTT TCCAGGCAGC GATTCCACCA TGCACATCAG
  AGTTATCACT GCAGCTTCGT TCGGCACCGG GAGGTGGAGT GGCAGTGGTG GCGGGGGGCG
  GCAAAGCACC CGCAGCAACC AAGGGACAGC AGGGAGGAGG GTAGAGAAGG AGAGGGCAGG
  R
  CTAGGGAGGG CAAAGGAGAG GAGAGGGGAG GGGATAGAGG AGGGAGTAAA GCAGGGAGGA
  GGGGTACCAG GAGGAGGAGG AGGATAAGGG AGGAGTGGCA GGGAGAGGAG ATGAAGCAGA
  CTCATGGTAA GTACTGGGCA TCCTTCACGC CTATGACCCA GCAGGAAGGT GTTTTGTCCA
  CCTACATGAG AACTTGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417479	CHEV_13_70980698	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245461388					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70989939 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	9 bp upstream
Cpgi5821	CpG island 5821	within coordinates
Gm36529	predicted gene, 36529	within coordinates
Tssr123158	transcription start site region 123158	104 bp upstream
Tssr123159	transcription start site region 123159	66 bp upstream
Tssr123160	transcription start site region 123160	37 bp upstream
Tssr123161	transcription start site region 123161	10 bp upstream