rs245464265 SNP Detail

Summary

• ID
  rs245464265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23491760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGAGAT GCACTGATGA
  GTCTTTACTC CTACAACAAG CTTCTCCCTT CGCTGAGCTC TTTCCCTTTT TCACTCCGTG
  GAAGTCACAA CTTTTAATCC TTCCTTCCCT GTACAGGATG TTGCCTGTCC AGTGTGGCTT
  TTTAATCTTT GGTTTGTTTG CATTGTAGTT CTCACAGATA AGATTTTAGC AAATTTACTC
  Y
  ATCTTGGTTA GTAACGGATA AAACTGAAGG GTCAGAGGGT TTCCGTAGTG TAGTGGTTAT
  CACGCTCGCC TCACACGCGA GAGGTCCCCG GTTCGAAACC GGGCGGAAAC AGTACTGTTT
  TTCTCACTTT CTCTTGTGTT TTCAGAGTCT CAGCTCATTC CCTACACTTC TGAGGAGTCA
  AAACAATCTC AGCTCCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324288351	CHEV_13_23399459	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245464265					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23491760 () rs orientation: forward

Symbol	Name	Function Class
4930557F10Rik	RIKEN cDNA 4930557F10 gene	within coordinates
4930597G05Rik	RIKEN cDNA 4930597G05 gene	1841 bp downstream
Cpgi5346	CpG island 5346	1899 bp proximal
n-TIaat9	nuclear encoded tRNA isoleucine 9 (anticodon AAT)	1462 bp downstream
n-TVcac11	nuclear encoded tRNA valine 11 (anticodon CAC)	39 bp upstream
Rr475820	regulatory region 475820	within coordinates
Rr475821	regulatory region 475821	963 bp proximal