rs245467555 SNP Detail

Summary

• ID
  rs245467555
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77543090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTGTAGC ATTTAAGAAT
  GAAGAAAGGG GGCTGGTAGG ATGGCTCAGC GGGTAAGAGC ACTGACTGCT CTTCTGAAGG
  TCCTGAGTTC AAATCCCACA ACCACATGGT GGCTTACAAC CATCCATAAT GAGATCTGAC
  GCCCTCTTCT GGTGTGTCTA AAGACAGCTA CAGTGTACTT AAATAAAAAA AATAAAAAAA
  W
  TAAAAAAGAA TGCAGAAAGG TTTCTCAGTA GGCCACGGAC AGCATCGGAC TGATGCGGGT
  TATTAGGAAG TTTCTTTTCA ATGATCTATC TGCCCGTTAC TGAAGATGAT ACCACACTGA
  CCTTTAGAAA GTCATTTCGT ACTCCAGGTG CCTATAAAAG CCCTCTGTCA ATTACAATCA
  TTTGAATTGC TTTTCTTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378138856	MGP_WTSI_9_77483615	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245467555					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378138856	MGP_WTSI_9_77483615	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77543090 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	within coordinates
Klhl31	kelch-like 31	924 bp upstream
Rr683389	regulatory region 683389	202 bp proximal
Rr683390	regulatory region 683390	703 bp proximal
Rr683391	regulatory region 683391	1009 bp proximal
Rr683392	regulatory region 683392	1606 bp proximal
Tssr86194	transcription start site region 86194	661 bp upstream
Tssr86195	transcription start site region 86195	686 bp upstream
Tssr86196	transcription start site region 86196	728 bp upstream
Tssr86197	transcription start site region 86197	767 bp upstream
Tssr86198	transcription start site region 86198	811 bp upstream
Tssr86199	transcription start site region 86199	813 bp upstream
Tssr86200	transcription start site region 86200	828 bp upstream
Tssr86201	transcription start site region 86201	905 bp upstream