rs245471290 SNP Detail

Summary

• ID
  rs245471290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31195241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTGGTT CCTTCCTCTG
  GAGTGAGGAG GAAAATGATG CGCACGTAGA TTCCGAGAGC GTATTCTTCT AGAATTTTCC
  CATGATGGTT GGTGGGGAGC GATGGGGACT CTGAGACAGG TGCGGGGCTG CCGGCTAAAA
  GTTGCTCAGC GCACCACGGT GGGCGACAGG GTCCCCGGAG CGGGCGGAGG ACCCCCACTC
  Y
  CTGTCCCTGG CGTCGCCCAC TTGTCACGCC AGGCTGCTGC GTGCGCTCGG CTGCAGAGGA
  GGTGGCGTAG TTTCTCTTTC TCCCACCTCT TCTCACTTGT TTTGTAGCCG TGGGCTCCCC
  TAATGCTTTC CTCTCCACAA TGTTGTTTCA TTATATCATG TCCATCATGT GACACCGGAG
  AGGCCTCTCT ATGGAAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367847418	MGP_WTSI_6_31168306	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245471290					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367847418	MGP_WTSI_6_31168306	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31195241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17266	CpG island 17266	893 bp distal
Cpgi17267	CpG island 17267	within coordinates
Cpgi17268	CpG island 17268	1992 bp proximal
Gm67814	predicted gene, 67814	741 bp downstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr379139	regulatory region 379139	within coordinates
Rr627936	regulatory region 627936	1964 bp distal
Rr627937	regulatory region 627937	1748 bp distal
Rr627938	regulatory region 627938	802 bp distal
Rr627939	regulatory region 627939	301 bp distal
Rr627940	regulatory region 627940	15 bp proximal
Rr627941	regulatory region 627941	1361 bp proximal
Tssr55455	transcription start site region 55455	1606 bp downstream
Tssr55456	transcription start site region 55456	1370 bp downstream
Tssr55457	transcription start site region 55457	1343 bp downstream
Tssr60177	transcription start site region 60177	782 bp upstream
Tssr60178	transcription start site region 60178	638 bp upstream
Tssr60179	transcription start site region 60179	67 bp downstream
Tssr60180	transcription start site region 60180	115 bp downstream
Tssr60181	transcription start site region 60181	138 bp downstream
Tssr60182	transcription start site region 60182	164 bp downstream
Tssr60183	transcription start site region 60183	388 bp downstream
Tssr60184	transcription start site region 60184	728 bp downstream
Tssr60185	transcription start site region 60185	1931 bp downstream
Tssr60186	transcription start site region 60186	1981 bp downstream
Tssr60187	transcription start site region 60187	1993 bp downstream