rs245478022 SNP Detail

Summary

• ID
  rs245478022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76301488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGGTTA GTCACCATCC
  TTAATAAGTC GATTAAACAA GTAATGGTAA GATATAGAAA AAGGAGATTT ATTCAATACG
  GCCACATTGG GAAGAGGGAC AAAGAGAAGT CTTATCTTCT GAGTTCTAAT ATGAAACTGA
  GGTTTAAGTA AAGAGTCAGA CTTGATATAG AGTTGAACAG TGAAGGTCGA GGTGTGGACC
  Y
  GTCCATTACT GTCTTGGCTT CAGTCCTGCA AGGTGATCTC TGAAATCTCT TTCCCCGGAA
  ACAAATTTCT ACTCTGGCTG GTGGAAAAGC AATTCCCTGG AGTGCTTCCT CCGCAGATGG
  CTAACCAGAG GGACACAATT GCCTCGTTAA GGATAGCCTC ACTCTTGCTA GGAGGGTAAC
  AGAGAGGCAG TTATCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104756	CHEV_12_77355701	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245478022					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76301488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	173 bp proximal
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	584 bp upstream
Rr403350	regulatory region 403350	331 bp upstream
Rr468112	regulatory region 468112	94 bp proximal
Rr468113	regulatory region 468113	1013 bp proximal
Tssr113934	transcription start site region 113934	495 bp upstream
Tssr113935	transcription start site region 113935	530 bp upstream
Tssr113936	transcription start site region 113936	576 bp upstream
Tssr113937	transcription start site region 113937	618 bp upstream
Tssr113938	transcription start site region 113938	634 bp upstream
Tssr113939	transcription start site region 113939	657 bp upstream
Tssr113940	transcription start site region 113940	739 bp upstream
Tssr113941	transcription start site region 113941	769 bp upstream
Tssr116711	transcription start site region 116711	332 bp downstream
Tssr116712	transcription start site region 116712	358 bp downstream