rs245487090 SNP Detail

Summary

• ID
  rs245487090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82290605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCCAAT AGCTGACTGT
  GAGCATCCAC TTCTGTGTTT GCTAGGCCCC GGCATAGTCT CACAAAAGAC AGCTACATCT
  GGGTCCTTTC AGCAAAATCT TGCTAGTGTA TGCAATGGTG TCAGCGCCTG GAAGCTGACC
  ATGGGATGGA TCCCTGTATA TGGCAATCAC TAGATGGTCC ATCCCTTCGT CACGATTCGG
  R
  TGACAGTGGA TGCTGGCGAG GGTGTGGAGA GGGAGGAGCA CTCCTCCATT GTTGGTGGGA
  TTGCAGGCTT GTACAACCAC TCTGGAAATC AGTCTGGCGG TTCCTCAGAG AGTTGGACAT
  GGTACTACCG GAAGATCCCA CAGTGCCTCT CCTGGGCATG TATCCAGAGG ATGTCCCGGC
  CGGTAGGGGG GACGCATGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386668594	MGP_WTSI_12_83344818	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245487090					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386668594	MGP_WTSI_12_83344818	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82290605 () rs orientation: forward

Symbol	Name	Function Class
Rr261652	regulatory region 261652	196 bp proximal
Rr268532	regulatory region 268532	1196 bp proximal
Rr403397	regulatory region 403397	1609 bp upstream
Sipa1l1	signal-induced proliferation-associated 1 like 1	within coordinates
Tssr114221	transcription start site region 114221	811 bp upstream
Tssr114222	transcription start site region 114222	1687 bp upstream
Tssr114223	transcription start site region 114223	1854 bp upstream
Tssr114224	transcription start site region 114224	1899 bp upstream
Tssr114225	transcription start site region 114225	1975 bp upstream
Tssr116943	transcription start site region 116943	1567 bp downstream