rs245495456 SNP Detail

Summary

• ID
  rs245495456
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22713213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGCATTG GATCAGCGGA
  GCAGGGCGTT TGCTCACCTC TCCCTTCTGT CCGGCTCCAC AGCGGCCCTT CGGAGTGGTG
  TATGAGATGG AAGTTGACAC ACTGGAGACC ACTTGCCATG CTTTGGACCC CACCCCGCTG
  GCAAACTGTT CTGTGAGGCA GCTGACTGAG CACGTGAGTG CTGCCTTGTG GTTGGTTGGT
  G
  GGTGGGTGGG TGGGTGGGAG CTGCCCAGCC ACCACAGTTC AGCAAAGTGC AGGTTTGGCT
  TTCTCCATCT CCCAGCAGCC ATCTTGGCTA GCCAGAGAGC AAAGTCTAAA ACCCGCTGTG
  GGATAGATGG TGCCTTCCCC GAGGTTGATT TTCACAACAC TTGGGCTTTT CTTCTTGAAG
  CCCTCGGGAG AGCAGATTAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss395628342	MGP_WTSI_16_22894536	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs245495456					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628342	MGP_WTSI_16_22894536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22713213 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	77 bp upstream
Tssr4818	transcription start site region 4818	1639 bp downstream
Tssr4819	transcription start site region 4819	868 bp upstream
Tssr4820	transcription start site region 4820	1484 bp upstream
Tssr137558	transcription start site region 137558	1882 bp downstream
Tssr137559	transcription start site region 137559	1686 bp downstream
Tssr137560	transcription start site region 137560	1643 bp downstream
Tssr137561	transcription start site region 137561	1618 bp downstream
Tssr137562	transcription start site region 137562	1292 bp downstream
Tssr137563	transcription start site region 137563	222 bp downstream
Tssr137564	transcription start site region 137564	192 bp downstream
Tssr137565	transcription start site region 137565	55 bp downstream
Tssr137566	transcription start site region 137566	46 bp downstream
Tssr137567	transcription start site region 137567	314 bp upstream
Tssr137568	transcription start site region 137568	333 bp upstream
Tssr137569	transcription start site region 137569	364 bp upstream
Tssr137570	transcription start site region 137570	379 bp upstream
Tssr137571	transcription start site region 137571	713 bp upstream
Tssr137572	transcription start site region 137572	736 bp upstream
Tssr137573	transcription start site region 137573	830 bp upstream
Tssr137574	transcription start site region 137574	851 bp upstream
Tssr137575	transcription start site region 137575	857 bp upstream
Tssr137576	transcription start site region 137576	1537 bp upstream
Tssr137577	transcription start site region 137577	1959 bp upstream
Tssr140504	transcription start site region 140504	71 bp upstream
Tssr140505	transcription start site region 140505	22 bp upstream
Tssr140506	transcription start site region 140506	367 bp downstream
Tssr140507	transcription start site region 140507	750 bp downstream
Tssr140508	transcription start site region 140508	794 bp downstream
Tssr140509	transcription start site region 140509	813 bp downstream
Tssr140510	transcription start site region 140510	828 bp downstream
Tssr140511	transcription start site region 140511	871 bp downstream