rs245496779 SNP Detail

Summary

• ID
  rs245496779
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75547646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTTGAC ACCCCCCTAC
  CCCAGCATTT TCTAGATCTG CAGGCCCTCT TTGAAAGGAA AGCTCTGCTT AAGACGCGGC
  TTGAGGGTCT AGCTAAGCCT GTACCTGCCC CACCCTTGGG TGGCAGCTGG GTTTCCCCTG
  GGAGAACCCT CCACCTCCTG AGGCTTCTCA ACGGTGGAGG AGCTGCGGGA GGAGGGGGGG
  C
  GGGGGGGGAA GCCTAGCAGC TGGAGAGGAG GGAGTGGCTC CAGTTGAGGG AGGGCAGGCC
  ACCCGCTTCT GGGGTGGGCA TCAAGTCCAG CTGAGGTGGT GGCCCATGGG GAAACCCTCT
  CCTAGGACGT GAGCTCTGGC TTGATCCCTA AACAACTTCT ACTTCTGGGA ATTTGGGGTG
  GATGGGAGTT GGAGAGATGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss383902936	MGP_WTSI_11_75470322	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs245496779					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383902936	MGP_WTSI_11_75470322	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75547646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3273	CpG island 3273	233 bp distal
Myo1c	myosin IC	within coordinates
Rr402734	regulatory region 402734	1944 bp downstream
Rr451247	regulatory region 451247	937 bp distal
Rr451248	regulatory region 451248	within coordinates
Tssr103026	transcription start site region 103026	1045 bp downstream
Tssr103027	transcription start site region 103027	964 bp downstream
Tssr103028	transcription start site region 103028	902 bp downstream
Tssr103029	transcription start site region 103029	883 bp downstream
Tssr103030	transcription start site region 103030	820 bp downstream
Tssr103031	transcription start site region 103031	783 bp downstream
Tssr103032	transcription start site region 103032	643 bp downstream