rs245502431 SNP Detail

Summary

• ID
  rs245502431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174189381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACATAT GATTGCATGT
  GAGATGGGGC ACATGTGGAA AGGCCCAACA TATGATTGTG CATGAGATGG GGCACACATG
  GGCAGGCCCA ACATATGATT GGGTGTGAGA ATGGGGACAT ATGGGGAGGC CAAACATATG
  ATTGGGTGTG AGAAGGGGGA CAGATGGGGG CCCCGAATAT GATTGGGTAT GAGATGGGGC
  R
  CAAATGGGGG CCCAACATAT GATTGGGTGT GAGAAGGGGG ACATATGGGG AGGCCCAACA
  TATGATTGGG TATGAGATGG GACACATGGG GCCCAACATA TGATTGGGTG TGAGAAGGGG
  GACATATGGG GAGGCCCAAC ATATGATTGG GTATGAGATG GGACACATGG GGCCCAACAT
  ATGATTGGGT ATGAGAAACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356687581	MGP_WTSI_2_174173089	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245502431					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356687581	MGP_WTSI_2_174173089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174189381 () rs orientation: forward

Symbol	Name	Function Class
Gnas	GNAS complex locus	844 bp downstream
Rr572113	regulatory region 572113	within coordinates
Tssr792	transcription start site region 792	1238 bp downstream
Tssr22139	transcription start site region 22139	1555 bp downstream
Tssr22140	transcription start site region 22140	1274 bp downstream
Tssr22141	transcription start site region 22141	1255 bp downstream
Tssr22142	transcription start site region 22142	1218 bp downstream
Tssr22143	transcription start site region 22143	1073 bp downstream
Tssr22144	transcription start site region 22144	1008 bp downstream
Tssr22145	transcription start site region 22145	987 bp downstream
Tssr22146	transcription start site region 22146	950 bp downstream