rs245503369 SNP Detail

Summary

• ID
  rs245503369
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113878219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGTGGAC AGAGAGGCCA
  GGATGGAGCC CCCAATCCAG ACAGAGTATT TACGCTCAGG GGGAGCAATA ATCTGCAGAG
  AGAAAACAAA ACCATCAGTG TGTTCTGAAG TCCCCAACAA TGAAGTGGGC AACAGGCTTG
  GAATATTCAC AGAAAAACCA TCACAGATTA ACCGATAGTA GACAACGTAG GAGATGCTAT
  R
  CAATAAGCAA TGTAGCCAAT CAGGCTTTGC AATCCTTCCT GTATTTCATC ATTTCTCTGC
  TTATTTGTAC TAAAGAATAA TATTCATGAA GGATAGTTCA AACGCTGGGG ACCTTTTAAA
  TGTGTAGATA GGTTTAGTTA TTGCTTCCCC CCCCCCCCAC ACACACACCG TGTTTCAGAT
  ATTTGCTTTT ATTCACTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315519	MGP_WTSI_2_113873474	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245503369					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315519	MGP_WTSI_2_113873474	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113878219 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	169 bp upstream
Tssr601	transcription start site region 601	158 bp upstream
Tssr19429	transcription start site region 19429	441 bp downstream
Tssr19430	transcription start site region 19430	331 bp downstream
Tssr19431	transcription start site region 19431	247 bp downstream
Tssr19432	transcription start site region 19432	164 bp downstream
Tssr19433	transcription start site region 19433	383 bp upstream
Tssr19434	transcription start site region 19434	436 bp upstream
Tssr19435	transcription start site region 19435	1431 bp upstream
Tssr19436	transcription start site region 19436	1812 bp upstream
Tssr25660	transcription start site region 25660	420 bp upstream
Tssr25661	transcription start site region 25661	399 bp upstream
Tssr25662	transcription start site region 25662	296 bp upstream
Tssr25663	transcription start site region 25663	270 bp upstream
Tssr25664	transcription start site region 25664	229 bp upstream
Tssr25665	transcription start site region 25665	121 bp upstream
Tssr25666	transcription start site region 25666	415 bp downstream
Tssr25667	transcription start site region 25667	442 bp downstream
Tssr25668	transcription start site region 25668	478 bp downstream
Tssr25669	transcription start site region 25669	507 bp downstream
Tssr25670	transcription start site region 25670	1463 bp downstream
Tssr25671	transcription start site region 25671	1506 bp downstream
Tssr25672	transcription start site region 25672	1575 bp downstream
Tssr25673	transcription start site region 25673	1610 bp downstream
Tssr25674	transcription start site region 25674	1814 bp downstream
Tssr25675	transcription start site region 25675	1862 bp downstream
Tssr25676	transcription start site region 25676	1899 bp downstream
Tssr25677	transcription start site region 25677	1926 bp downstream