rs245516329 SNP Detail

Summary

• ID
  rs245516329
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59522236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGATACA GGATGGCCGG
  TCTGGGAGAG CGCGTAGCCC AGGACTGCTT CGCAGTGTGC TCTTCGTGAG CCGGACACCC
  CATCTCTGGG CCATTGAGAG CCCCACTGAC TCCTTTCATT CTCCTGCAGT TAAAAGTGGC
  ATCTGGGTTT CCAACAACTC ACCTGAAAGC CCCCCTCCGC CCCCCCCCCC CCCCAACGTG
  M
  GCGCCCCACC TCTCCGTTTG CTGCTGCCAC CTACTGTCCA CTCTCGTGAA ATCTCTGATG
  CGTGGTCAAG CACAGAGAGA AACTCTTTCT TCTTGGTGGA TGAGAACAGT TTTGGGAGAG
  AAACGGATGG GGCGGGAGGA GAAGGCAGCA GATATATATT TTTTTCCCAA GTTGGTACTA
  GAGCAGCCAC CTCAGAGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394214983	MGP_WTSI_15_59481942	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245516329					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394214983	MGP_WTSI_15_59481942	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59522236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7127	CpG island 7127	542 bp distal
Gm56697	predicted gene, 56697	765 bp upstream
Rr311787	regulatory region 311787	within coordinates
Rr390806	regulatory region 390806	1030 bp upstream
Trib1	tribbles pseudokinase 1	within coordinates
Tssr4603	transcription start site region 4603	110 bp upstream
Tssr131386	transcription start site region 131386	1956 bp downstream
Tssr131387	transcription start site region 131387	1850 bp downstream
Tssr131388	transcription start site region 131388	1826 bp downstream
Tssr131389	transcription start site region 131389	1798 bp downstream
Tssr131390	transcription start site region 131390	1700 bp downstream
Tssr131391	transcription start site region 131391	1682 bp downstream
Tssr131392	transcription start site region 131392	337 bp upstream
Tssr134446	transcription start site region 134446	216 bp downstream