rs245525297 SNP Detail

Summary

• ID
  rs245525297
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152627628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGGAGAAA ACCTCACCTG TACCAGTTGG
  TCTTCCGATT GCTGGGGGGC ATCACTGTTC CTTCTGTCTG TTCCAAGTGC ATGTGTCGAG
  CGTGTGTGCC CTGTTCATAC TGTGTGAGCA CGTGGTGGAG tgtgtctgca tctgtgcgta
  S
  aggaacgtgg aggcccgagg ctgacctcta ctgtctttct ccactgctct ccacctttgt
  tttctgagac aggctctatc acagaacccg gagcctgcca ttttggctag tctggcacga
  catcttgccc aggattctct tgtctccctt                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320067897	CHEV_1_154599007	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245525297					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152627628 () rs orientation: forward

Symbol	Name	Function Class
Apobec4	apolipoprotein B mRNA editing enzyme catalytic polypeptide-like 4	within coordinates
Gm28792	predicted gene 28792	53 bp upstream
Rgl1	ral guanine nucleotide dissociation stimulator,-like 1	within coordinates
Rr31152	regulatory region 31152	within coordinates
Tssr9415	transcription start site region 9415	1351 bp downstream
Tssr9416	transcription start site region 9416	1324 bp downstream
Tssr9417	transcription start site region 9417	1313 bp downstream