rs245526814 SNP Detail

Summary

• ID
  rs245526814
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72305811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCTATGAT TATAATTAAA GCTCTTTTAA
  AAAGCACCCA AGGTTTTTCG GTCGTTGCTG TTTGGGTTTT TTTTTTTCCC CCTGTGTTTT
  ACTCTTTAAA AACAGGGGAG CCTCGTTTCA TCCCTGTGCC GGTCTTAGTG AGAAGGGCTA
  W
  aagaaagaaa gaaagaaaga aagaaagaaa gaaagaaaga aagaaagaaa gaaagaaaga
  aagaTCTTCT AACTAGCTCT GGTTGTTCCC AATTTTGCCT GGAGAAAAAT GGACAATCCA
  CAGTGTAATC GCCTGCAGCT TTTATCTCCG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342581	CHEV_2_72313524	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245526814					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72305811 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	729 bp upstream
Cpgi11756	CpG island 11756	445 bp proximal
Rr397036	regulatory region 397036	299 bp upstream
Tssr18351	transcription start site region 18351	529 bp upstream
Tssr18352	transcription start site region 18352	706 bp upstream
Tssr18353	transcription start site region 18353	746 bp upstream
Tssr18354	transcription start site region 18354	758 bp upstream