rs245544656 SNP Detail

Summary

• ID
  rs245544656
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141147172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCATCCGC AGGTGACAGC
  ACCCCACCAC ACACCTCCCT CCATCCTCCC ATCCCCTCTC TGTGGTGCTC CTTGGACTTT
  GGAGAGGCTA TTGTTTTGGG TGTTTTTCAA ACAGGGTTTC AGGAATAATG ACCTCCAGCT
  TCCTATGAAG CCGAGGCTGA CCTTGAACTC CCGATCCTCC AGGGGCAACA GGCATGTCCC
  W
  CCACACCCAA CTATGGACCA GATCGGCTCT GAAACTCCTC TCGTCTCTGG GATCTGGCAG
  AGAAGCATGT CTGGTGTCAG GAGAATGACC TTGGTGACCT TTCGAGGTCC TGCCTGGCCA
  CTGAAGCCAG CACTCAATAT TTATGTGGAT GACTGCTCAG GAGTGTGGGG AAAGGAGGGG
  GGATGGTGGG CGGGCGTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363520283	MGP_WTSI_4_140975776	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245544656					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363520283	MGP_WTSI_4_140975776	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141147172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15226	CpG island 15226	183 bp distal
Cpgi15227	CpG island 15227	1773 bp proximal
Gm70182	predicted gene, 70182	1621 bp downstream
Gm70184	predicted gene, 70184	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	918 bp upstream
Rr100445	regulatory region 100445	628 bp proximal
Rr103390	regulatory region 103390	1772 bp distal
Tssr40052	transcription start site region 40052	366 bp upstream
Tssr40053	transcription start site region 40053	896 bp upstream
Tssr40054	transcription start site region 40054	1798 bp upstream
Tssr40055	transcription start site region 40055	1826 bp upstream
Tssr40056	transcription start site region 40056	1833 bp upstream
Tssr40057	transcription start site region 40057	1889 bp upstream
Tssr40058	transcription start site region 40058	1924 bp upstream
Tssr40059	transcription start site region 40059	1947 bp upstream
Tssr40060	transcription start site region 40060	1980 bp upstream