rs245546992 SNP Detail

Summary

• ID
  rs245546992
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84495613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGCGCGG CGGCGGGGCA
  AAGCGCACCG GGGGAGGGGA CTGAACGCTG ACCGGCCGGG GTCTCCAGGC AACGCCGCCC
  GCCAGCCCGC GGACGTCAGG CTCCTTCTCG GCTTCTCATT GGTCGCCGCC AATTTTTCCC
  CTTCGGGGGA GGGGAGGAGA GGGGAGGGGA GGGGCGGGCA GCCTGGGCGT CCCGAGCGGC
  K
  TGGGGCGTGC GGCCCCCTTG GGTCCTGCTG GGTGGCGGCG GCGGGAATAC CTCGCTCTCC
  TCCGCCTCTA CGAGTATAAC GTTGGAAAGC ACGTACACGT TCTATCTGCC CAGGACGGGG
  CTACCCGGGA CGTGCCTTTC CTCGCCCGAT CCGGCTGGGC CGACTGGCGC AGCTTTTATC
  TCCCATCCTA GTTTTTGCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399282291	MGP_WTSI_17_84587525	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245546992					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399282291	MGP_WTSI_17_84587525	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84495613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	933 bp distal
Cpgi9566	CpG island 9566	within coordinates
Gm36279	predicted gene, 36279	1695 bp upstream
Gm56881	predicted gene, 56881	within coordinates
Rr333589	regulatory region 333589	1188 bp proximal
Rr340271	regulatory region 340271	within coordinates
Rr405496	regulatory region 405496	11 bp downstream
Thada	thyroid adenoma associated	1891 bp downstream
Tssr146045	transcription start site region 146045	1068 bp downstream
Tssr146046	transcription start site region 146046	419 bp upstream
Tssr149654	transcription start site region 149654	1988 bp upstream
Tssr149655	transcription start site region 149655	1844 bp upstream
Tssr149656	transcription start site region 149656	1803 bp upstream
Tssr149657	transcription start site region 149657	1573 bp upstream
Tssr149658	transcription start site region 149658	1530 bp upstream
Tssr149659	transcription start site region 149659	1494 bp upstream
Tssr149660	transcription start site region 149660	1468 bp upstream
Tssr149661	transcription start site region 149661	1405 bp upstream
Tssr149662	transcription start site region 149662	1365 bp upstream
Tssr149663	transcription start site region 149663	1296 bp upstream
Tssr149664	transcription start site region 149664	1253 bp upstream
Tssr149665	transcription start site region 149665	1181 bp upstream
Tssr149666	transcription start site region 149666	1119 bp upstream
Tssr149667	transcription start site region 149667	1019 bp upstream
Tssr149668	transcription start site region 149668	995 bp upstream
Tssr149669	transcription start site region 149669	933 bp upstream
Tssr149670	transcription start site region 149670	428 bp upstream
Tssr149671	transcription start site region 149671	286 bp upstream
Tssr149672	transcription start site region 149672	231 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	238 bp upstream