rs245552069 SNP Detail

Summary

• ID
  rs245552069
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16191563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCCTCT CTCTCTCTCT
  TCTCTCTCTC TCCCTTCCCT CCCTCTCACT CCCTCCCCTT CCCTCCCCTC CCCCTCTCCT
  TCTCTCTTCC TTTCTCCCTC CCCCTCCCTT GCTGTCCCTC TTTCTCCCCC TTTCCCTCTG
  TCTTCTCTTC CCCCTCTCTC TTTTCTCCCT GTCTCTCCCT CCCATCCTCT CTCAGTCTCT
  K
  TCTCCCCCCA CCCTGTCTCT TCCTTCCTCC CTCCCTCTCT CCCTCCCTCC CTCCCTCCCT
  CTCTCCCTCC CTCCTTCCTT CTCTTTTACT CGGAGACAGT CAGAACTCTC CTCCCTGACA
  GCCACAAACC TACAGCACTG ACTGCATTCA GAGAGGGAAC CTGCAAACAA AACTTCACAG
  AAAACTTTTT GCTCTTGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387820262	MGP_WTSI_13_16108811	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245552069					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387820262	MGP_WTSI_13_16108811	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16191563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	346 bp proximal
Inhba	inhibin beta-A	within coordinates
Tssr118435	transcription start site region 118435	638 bp downstream
Tssr118436	transcription start site region 118436	272 bp downstream
Tssr118437	transcription start site region 118437	36 bp downstream
Tssr118438	transcription start site region 118438	69 bp upstream
Tssr118439	transcription start site region 118439	86 bp upstream
Tssr118440	transcription start site region 118440	305 bp upstream
Tssr118441	transcription start site region 118441	395 bp upstream
Tssr118442	transcription start site region 118442	641 bp upstream
Tssr118443	transcription start site region 118443	1122 bp upstream
Tssr118444	transcription start site region 118444	1189 bp upstream