rs245559028 SNP Detail

Summary

• ID
  rs245559028
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60657956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTCTTG TAATAGGTGT
  AGGATTCACA AGGGAACCTG CTGTAAAGTT ACATTCCTGC CTAGAAATTT ATATCGATTC
  TGCCGTCAGA ATCTATATAA GTAAACCTAG ATTTTCCGTT TTAAATCCCT AAGGCAATTC
  CTCTGGTGAT GCAAAACCGC ACTTAAAAAA CACTGGCTGG CTCTGGTCCT AGACCCTGAC
  S
  CCTGAGAAGG GAGAATGTGT CTCTATCCAG GAAAGGAGAT TTAAACTCAC AAAAACAAAA
  TAAAAGATGA TAAGCCATGA TAATCCATGA GGCCAACGAA TTCACTAACA TGTAAAAAAA
  AAAAAAACAA CTGCAAATTA TCTGGATAAT AATATACTTT CTCCTGTGAG CAAAACACAT
  CTATGAAGCT AATCTAGTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325639818	CHEV_18_60684538	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245559028					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60657956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	1019 bp proximal
Dctn4	dynactin 4	1301 bp upstream
Gm58902	predicted gene, 58902	within coordinates
Tssr151313	transcription start site region 151313	1310 bp upstream
Tssr153448	transcription start site region 153448	1092 bp downstream
Tssr153449	transcription start site region 153449	1159 bp downstream
Tssr153450	transcription start site region 153450	1202 bp downstream