rs245563418 SNP Detail

Summary

• ID
  rs245563418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153061695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCTCTTTG CAGATCCTTG ACCTGACCGA
  GTGTGGATCC TCGAGGTGAA TTCAGCCACC AACACCGTGT GCAGGGAAGG GCAAGTTGGA
  GGCGCGGTGG GAGCACTCAC CTTCCCTCCT GGAGGTGGCC TGGGCTGCGG GCAGCAGGAG
  Y
  GCGACACCAA GGCAGCAGCT GAGCCAGAGC GCAGGCATGG CCGGGCCGCG CTCCGCCGCT
  GCGGGTGCCT GCCGGGCGCC GAGTCTTCGC TCTGCTGTGC CTTCCTTTTC CCTCGATCAG
  GTGTTTTATC GACTCTTCTC CCTGACTCAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320071232	CHEV_1_155033079	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245563418					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153061695 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	within coordinates
Lamc2	laminin, gamma 2	within coordinates
Rr13130	regulatory region 13130	1306 bp proximal
Rr28719	regulatory region 28719	within coordinates
Tssr14250	transcription start site region 14250	62 bp downstream
Tssr14251	transcription start site region 14251	122 bp downstream
Tssr14252	transcription start site region 14252	153 bp downstream
Tssr14253	transcription start site region 14253	176 bp downstream
Tssr14254	transcription start site region 14254	193 bp downstream