rs245563623 SNP Detail

Summary

• ID
  rs245563623
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21333228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGGTTGA ACTCCTCTAC CATGTGGAAG
  AGCTGGACCC GGGCGTTGTG GACAACTTCC CTCTCCTGAA AGTACTCTAC ATATCTTACC
  TCATGGGAAC CAATATGTTG ACCATAAGGG TGATCCTGAT GCAACTTCCA GCTACTGCCT
  K
  CCTCCATAGC TAGCCCTCTC ATTTAACCTA TGAGATTCGA CTTTAGATGC TAGTTCTGAG
  ACATAAAAAG AATCCTGTTA CATGAGGAAA TCTGAGGAGG ATGCTATCTC AGGACATATG
  ACTTTGTCTT GTATAATGGA AAGAACCCAG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319656016	CHEV_1_21253085	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245563623					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21333228 () rs orientation: forward

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	within coordinates
Tssr6075	transcription start site region 6075	170 bp downstream
Tssr6076	transcription start site region 6076	136 bp downstream
Tssr6077	transcription start site region 6077	101 bp downstream
Tssr6078	transcription start site region 6078	1832 bp upstream