rs245569808 SNP Detail

Summary

• ID
  rs245569808
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55206358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCTGGT TTGCCCTCTT
  CTTCCTTTCC TAGGCCCCCT TGTCTCCCCT GGCTCTCACA TACTCTTTCC AGCTGCCTCC
  CAAGCCAGCC CTACAGTCTG ATGAACATTC TAGAGTATGT GGACACAGAT GGACGCTCTG
  GCCACAGGTG AGAAGGACCA TTCCTTTGTT ACCTGGCTCC CCCGTCTCTG TCTGTTCCTG
  Y
  GTCTACCTTC TGTTCCCTGT CTCGACATTA ACCCTAGCCT CTGGTGTTCT GGTGCTCTGC
  CTTCAGCAGG CTGATTTCAC GGAGCGCTCA ACCTGGCTTG TCCTTGCTTC CATGTCTTGC
  CCCGGGGTCC TTCTTCTACT CTCTCCAGCT TCCCTTCTCC CTGTCTTTCA TGATTTACAT
  CTAAAGGTAG CCTGGGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391147608	MGP_WTSI_14_55587738	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245569808					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391147608	MGP_WTSI_14_55587738	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55206358 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	1974 bp upstream
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	1783 bp downstream
Rr407057	regulatory region 407057	1118 bp distal
Rr492379	regulatory region 492379	1770 bp distal
Rr492380	regulatory region 492380	96 bp distal
Rr492381	regulatory region 492381	760 bp proximal
Tssr125718	transcription start site region 125718	218 bp downstream
Tssr125719	transcription start site region 125719	126 bp downstream
Tssr125720	transcription start site region 125720	101 bp downstream
Tssr125721	transcription start site region 125721	89 bp downstream
Tssr125722	transcription start site region 125722	325 bp upstream
Tssr125723	transcription start site region 125723	394 bp upstream
Tssr125724	transcription start site region 125724	406 bp upstream
Tssr125725	transcription start site region 125725	1266 bp upstream
Tssr125726	transcription start site region 125726	1291 bp upstream
Tssr125727	transcription start site region 125727	1324 bp upstream
Tssr128744	transcription start site region 128744	1964 bp upstream
Tssr128745	transcription start site region 128745	1679 bp upstream
Tssr128746	transcription start site region 128746	926 bp upstream
Tssr128747	transcription start site region 128747	902 bp upstream
Tssr128748	transcription start site region 128748	858 bp upstream
Tssr128749	transcription start site region 128749	827 bp upstream
Tssr128750	transcription start site region 128750	805 bp upstream
Tssr128751	transcription start site region 128751	799 bp upstream
Tssr128752	transcription start site region 128752	740 bp upstream
Tssr128753	transcription start site region 128753	541 bp upstream
Tssr128754	transcription start site region 128754	471 bp upstream
Tssr128755	transcription start site region 128755	1814 bp downstream
Tssr128756	transcription start site region 128756	1831 bp downstream