rs245570872 SNP Detail

Summary

• ID
  rs245570872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52202085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTGCAA CTGTCCCCAC
  TCTTTATTTG ACCTTCCCGG AAGGCCGTGG GAACTCCACG GAAGGCAGGA TGCCCCAGGG
  CCTTTGATCA CATCTCCACT TTATTTGAAT AAATCTGGCA AAGGGACCCA AAGCCCGCAT
  CCTCATCTTG GGCAGGATTT CCGCCGCCAC CTTCCAAAAG CAAGAAATGG AGGGAATCTG
  R
  GGTCTCCCCA AACTTCCCGG GTCAGATTGC CCGACTGACG TTGCTGCCAC AGTTTGTGAA
  CAATCTAGCT GCACAAAAGA CTTCTCTGCG CTGCTTTCGA AGAACCGCCC AAAGTCTGTC
  TGTCCTAGGC CAGGGCAGCT TAGGAGAGGG GCGGCGGGTC TCCGCTCTAC TCGCCCGCCC
  GCCCCGCCCC CTCACTGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368308931	MGP_WTSI_6_52175104	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245570872					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368308931	MGP_WTSI_6_52175104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52202085 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17430	CpG island 17430	598 bp distal
Cpgi17431	CpG island 17431	25 bp proximal
Gm57855	predicted gene, 57855	within coordinates
Hoxa9	homeobox A9	within coordinates
Rr146300	regulatory region 146300	within coordinates
Tssr61006	transcription start site region 61006	494 bp upstream
Tssr61007	transcription start site region 61007	111 bp downstream
Tssr61008	transcription start site region 61008	132 bp downstream
Tssr61009	transcription start site region 61009	717 bp downstream
Tssr61010	transcription start site region 61010	840 bp downstream
Tssr61011	transcription start site region 61011	1040 bp downstream
Tssr61012	transcription start site region 61012	1060 bp downstream