rs245573906 SNP Detail

Summary

• ID
  rs245573906
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52148978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATCTAGA GGTCAGAATT
  CCCAACACTG GAACAAGGAG GGATTCCAAC TTCACCAGGC TCAAACCGCC TTAGAGAGGC
  CCAGAGGGAC TTCAGTCAGA TTTATGTCTG AGGGATCCTC TCACAGTAAC CGTATCACCT
  TCCTAAGTAG CAAAGATTCT GGAAAGATTT GTTTTCCCTG GTGTGTGTGG GGGGGGGGGG
  S
  GGGGAGGGCA CATTTCTGGA GATGTTTCTC TCCTCCTAGG CTGGCTGTAA TAGCTAGAAG
  TGGCTTGGAG CGTGGAGCTG GTACAAGGCC AGAGGCCCCA CCTCCTAAAG GCATTCATTT
  ACCTGAGCTG GAGCCGCTGG TTTTCTGCTT AGTGTTCTGC CTTGACTCTT TCATCCAGGG
  AAAGATTTGT TTGCCCACGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	SPRET/EiJ	SWR/J
ss368308273	MGP_WTSI_6_52121997	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	G	C	G	G	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	SPRET/EiJ	SWR/J
rs245573906					SNP	C	C	C	C	G	C	G	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368308273	MGP_WTSI_6_52121997	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52148978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17416	CpG island 17416	931 bp distal
Cpgi17417	CpG island 17417	362 bp proximal
Gm15050	predicted gene 15050	883 bp upstream
Gm28308	predicted gene 28308	within coordinates
Hoxa3	homeobox A3	within coordinates
Rr630350	regulatory region 630350	393 bp proximal
Rr630351	regulatory region 630351	894 bp proximal
Tssr56504	transcription start site region 56504	812 bp upstream
Tssr56505	transcription start site region 56505	877 bp upstream
Tssr56506	transcription start site region 56506	949 bp upstream