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rs245578643 SNP Detail
Summary
  • ID
    rs245578643
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr10:29410980 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATTATCAAA CAACCCAAAG
    GCAGGGAGAC CCAACTGCCT GGGGCTCTAG GCCTCCGTCG GAGCCTCAAA GGAAAGCACA
    AATCCCTACA GCGAATCTAG GAAAGAAAGA AAGATTTCCA GATCCTGATT TACAGGGGGG
    GGGGGGGGGG GGGGGGGGCA GACTAGCACC GGGTGCACCG ACTCCAGTAC TGGTTTGTGT
    W
    CTGGAGTAGA AGAGCCAGTG CCCCGAGTTG CTATCTCCTG TGGGAGGCAT AGGGTGTAGG
    TTGAAAAGAC TGTTTCCTCC AGCAGCTGGG TCTGGGCAGG CAAAACCAGC TGACAGGTGA
    ATGTGGTGGA AGGGAGCAAA GACATAACGC AAAGCAAAAC CAAAACAACA ACAACAAAAA
    CAAACAACAA CAATACCCCC                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss379871017 MGP_WTSI_10_29254790 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245578643 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss379871017 MGP_WTSI_10_29254790 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:29410980 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi1415 CpG island 1415 1251 bp distal
Cpgi1416 CpG island 1416 211 bp distal
Cpgi1417 CpG island 1417 438 bp proximal
Gm48159 predicted gene, 48159 within coordinates
Rr429491 regulatory region 429491 1758 bp distal
Rr429493 regulatory region 429493 1829 bp distal
Rr429494 regulatory region 429494 257 bp distal
Rr429495 regulatory region 429495 within coordinates
Rr429496 regulatory region 429496 873 bp proximal
Rspo3 R-spondin 3 Intron
Tssr92878 transcription start site region 92878 137 bp upstream
Tssr97164 transcription start site region 97164 803 bp downstream
Tssr97165 transcription start site region 97165 823 bp downstream
Tssr97166 transcription start site region 97166 873 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory

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