rs245581420 SNP Detail

Summary

• ID
  rs245581420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67062062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGGGGACT GTGCTGGAGT GTGGTGTGGT TGATCGGCCC
  AGTGACACTT CTAGCTTTGC AGGAAACTGA TCATTCTTCT CCCCATCAGG TGTCAACTGC
  R
  AATAGCTTCT TGGTTAGGGG CGGGACTAAG TCCACTCGGG TCCTGAGACC CGACCATCAC
  CACCATCACC ACCAGGCCTA ATGCTTTCAC GCTGCTGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322989814	CHEV_9_67002587	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245581420					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67062062 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr5	DNA segment, Chr 9, Derry C. Roopenian 5	785 bp proximal
D9Mit302	DNA Segment, Chr 9, Massachusetts Institute of Technology 302	782 bp proximal
D9Mit302.1	DNA segment, Chr 9, Massachusetts Institute of Technology 302.1	561 bp proximal
Gm19299	predicted gene, 19299	within coordinates
Gm40529	predicted gene, 40529	1605 bp downstream
Gm68695	predicted gene, 68695	within coordinates
Rr681887	regulatory region 681887	1090 bp distal
Rr681888	regulatory region 681888	655 bp distal
Rr681889	regulatory region 681889	1833 bp proximal
Tssr90326	transcription start site region 90326	439 bp downstream
Tssr90327	transcription start site region 90327	466 bp downstream