rs245582348 SNP Detail

Summary

• ID
  rs245582348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114267713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG ATTGGGAGGC TGTAGCCCAG
  R
  CTAGCCCCTA ACAGCTTGTG TAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321651935	CHEV_5_114579661	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245582348					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114267713 () rs orientation: forward

Symbol	Name	Function Class
Alkbh2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	1434 bp upstream
Cpgi16309	CpG island 16309	1254 bp distal
Cpgi16310	CpG island 16310	540 bp proximal
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	905 bp downstream
Rr617827	regulatory region 617827	1109 bp distal
Rr617828	regulatory region 617828	1377 bp distal
Rr617829	regulatory region 617829	355 bp proximal
Rr617830	regulatory region 617830	1052 bp proximal
Rr617831	regulatory region 617831	1851 bp proximal
Tssr48056	transcription start site region 48056	712 bp upstream
Tssr48057	transcription start site region 48057	736 bp upstream
Tssr48058	transcription start site region 48058	1505 bp upstream
Tssr48059	transcription start site region 48059	1532 bp upstream
Tssr52694	transcription start site region 52694	1433 bp upstream
Tssr52695	transcription start site region 52695	1053 bp downstream
Tssr52696	transcription start site region 52696	1934 bp downstream
Ung	uracil DNA glycosylase	734 bp upstream