rs245587961 SNP Detail

Summary

• ID
  rs245587961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128676791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC TTCCTTCCTT CCTTCCTTCC
  Y
  TCCTTCCTTC CTTCCTTCCT TCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	JF1/MsJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	WSB/EiJ	ZALENDE/EiJ
ss639197662	FVB_NJ_1_130645631	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	JF1/MsJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	WSB/EiJ	ZALENDE/EiJ
rs245587961					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639197662	FVB_NJ_1_130645631	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128676791 () rs orientation: forward

Symbol	Name	Function Class
Gm29599	predicted gene 29599	1872 bp upstream
Gm70593	predicted gene, 70593	within coordinates
Gm70801	predicted gene, 70801	1508 bp upstream
Tssr8546	transcription start site region 8546	1354 bp downstream
Tssr13487	transcription start site region 13487	1503 bp upstream