rs245588197 SNP Detail

Summary

• ID
  rs245588197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25794987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATGACTT GAGTTTGATC
  CCATGGAACC ATAATGTAGA AGAAGAGAAC CATTGACCCT CTGGCTTCCA CATGCATACT
  GTGGCATGCC TACCCATATG TATAAATGAA TATATTTTTA AAAAGAATTG GTTCCCTACT
  GGGCATGGTG GCATTTATCT GTCATCCAAG CACTAGGGAG AATGAAGCAA GATGTGAGTT
  R
  TAAGCCAGCC TAGGACACAT AGGAAGGCTC TACCTTTAAA AGCATAAGTA AAAAAGTTGA
  AACTGTCTTT AATTATTTAA GATCAAACAA TGACCCACAC TTTTTGATGT GTGTGCATCA
  CACATGTGGA GGTCGGAGGA TGATGTCAGT AGTTGGTTTT CACTTTTCTC TGTTCTATGT
  GCTCCTGAGG GTCAAGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324304650	CHEV_13_25702873	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245588197					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25794987 () rs orientation: forward

Symbol	Name	Function Class
Rr476237	regulatory region 476237	1017 bp distal
Rr476238	regulatory region 476238	1072 bp proximal