rs245596388 SNP Detail

Summary

• ID
  rs245596388
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169118349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATTATTA GTGTGCCCAT
  TTTACACATT TCAGTATAGT CTACCCAAGC TCTCTCGGCC ATGGCCTGGG ACTGTGGACT
  CAGATCTAAC ATGCTTTTCT TTTCTATGTT TAAAAAAAAG ATTTATTTAT TTTATGTATA
  TGAGTACACT GTGGCTGTTT TCAGACACAC CAGAAGAGGG CATCGGATCT CATTACTGAT
  K
  GTTGTAAGCC ACCATGTGGT TGCCGGGAAT TGAACTCAGG ACCTCTGGAA GAGCAGTTAG
  TGCTCTTACC CACTGAGCCA TCTCTCCAGT CCCATGCTTT CCTTTTCTAA AAAATTCTGA
  AGACTCCTTC ATCTCAAGCT GCTCCGAGCC CTTTACAAAA CATGCTTGTG ATGGTCTAGC
  TGTACAGACG TGGAAATTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320612078	CHEV_2_169101929	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245596388					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169118349 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr117	DNA Segment, Chr 2, Derry C. Roopenian 117	389 bp distal
D2Mit343	DNA segment, Chr 2, Massachusetts Institute of Technology 343	425 bp distal