rs245596856 SNP Detail

Summary

• ID
  rs245596856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108218544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATGTGTG CCTAATTGGT
  GACTTTAAGG GCCTCTTACT CCTGAACCAA CTCAGAAACA TATCCCGTGG TTCTAAACAA
  GCGGTTATGT GTGCATGCAG TTAGGTGGGG AGGAAATATA CCGCGTTACA GATGCCATGT
  AATGCTTTTA CCGCTGAACC ATGTCCATAG CCCTTGGTTG TTTTAAGACT GTAGCTCAAG
  R
  TGACCCCCAG CTCCCAGCAA TTCTGGCTCT GTCTCTTGAT TGCTATGATG ACTGTCATCA
  TGCTGGCCAG CCTGTAATAA CATCCTCCTA TCTCCACCAA TTGCTGGGAT TACAGGTGAG
  AGCCACTATG TCCCCTGTTA GTTTACTTTT GCTTCTTTCG GAGATCAGGT CTGTCCTCAG
  ACTCCTGATC CACCTGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378864997	MGP_WTSI_9_108243676	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245596856					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378864997	MGP_WTSI_9_108243676	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108218544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	1170 bp distal
Gm57050	predicted gene, 57050	1211 bp upstream
Gpx1	glutathione peroxidase 1	1003 bp downstream
Rr383883	regulatory region 383883	1527 bp downstream
Rr686786	regulatory region 686786	721 bp distal
Rr686787	regulatory region 686787	280 bp proximal
Rr686788	regulatory region 686788	1401 bp proximal
Tssr3010	transcription start site region 3010	1595 bp downstream
Tssr87097	transcription start site region 87097	1425 bp downstream
Tssr87098	transcription start site region 87098	1358 bp downstream
Tssr87099	transcription start site region 87099	1029 bp downstream
Tssr91519	transcription start site region 91519	1452 bp upstream
Tssr91520	transcription start site region 91520	1361 bp upstream
Tssr91521	transcription start site region 91521	1265 bp upstream
Tssr91522	transcription start site region 91522	1189 bp upstream
Tssr91523	transcription start site region 91523	1004 bp upstream