rs245603473 SNP Detail

Summary

• ID
  rs245603473
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128516589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAACATAAA CTCCCAACAG TCAATAAAAA
  AAAAAAACTG TACAAGACTG GTCAGTCTCT TATATCTGGA AAATGTGTAA CATAAAAAAG
  TTCTTTATCa tatatatata tatatatatt atatatGTCT TTGCATAAGT GTTAGCTGGA
  A
  TGAAAACTGG AGGATTCTGA CTCCGTGGAG ACGGAAGAGT GTCCACCCCG CTTTCCTTTG
  GAAAGGATCT TGAGGCTGGA GCCTCTGCTC ATGGAGTTGA GTGCATGCTG GGCAGAGCTT
  TTGAACTTGG CCCCGAGGAA GGCATAGAGG                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319965158	CHEV_1_130485429	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245603473					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128516589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi697	CpG island 697	1932 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Rr12058	regulatory region 12058	989 bp distal
Rr28453	regulatory region 28453	11 bp proximal
Tssr195	transcription start site region 195	1911 bp upstream
Tssr13461	transcription start site region 13461	390 bp upstream
Tssr13462	transcription start site region 13462	220 bp upstream
Tssr13463	transcription start site region 13463	120 bp upstream
Tssr13464	transcription start site region 13464	78 bp upstream
Tssr13465	transcription start site region 13465	65 bp upstream
Tssr13466	transcription start site region 13466	within coordinates
Tssr13467	transcription start site region 13467	35 bp downstream
Tssr13468	transcription start site region 13468	124 bp downstream
Tssr13469	transcription start site region 13469	177 bp downstream
Tssr13470	transcription start site region 13470	272 bp downstream
Tssr13471	transcription start site region 13471	341 bp downstream
Tssr13472	transcription start site region 13472	410 bp downstream
Tssr13473	transcription start site region 13473	423 bp downstream
Tssr13474	transcription start site region 13474	479 bp downstream
Tssr13475	transcription start site region 13475	503 bp downstream
Tssr13476	transcription start site region 13476	520 bp downstream
Tssr13477	transcription start site region 13477	581 bp downstream
Tssr13478	transcription start site region 13478	1964 bp downstream
Tssr13479	transcription start site region 13479	1993 bp downstream